rs27353233 SNP Detail

Summary

• ID
  rs27353233
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150696199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGTGAAA GGCTGGATGG
  AGCTACTAGG CTGGGATGGG CACTTGTGAC TGCTATCTGG CTACATCTCA TTCCATCTAT
  GTGAGTAATA GAACTAACTG CCTTGTCCCA GGGGTGGTAC CGACAAACAG GGCTCGGCAG
  GTTATCTGGG TTTTATCAAT TCCAATTATT TTATAAGGTC AACCAGAGGC TTCTATGGGA
  S
  ATAAAGAGGT AAGAATGAAC ATTATGAGGG GTTTAACAAG GACTGCTCAG GGAAGAATGA
  AGGAGGCTAG TGTTTAATAG AGCTAAACCA TTTTCCAAGA AAGTTTGAGT TTCTCTCCTG
  TCTCTGCCAC TGAACCAAGA CTTTCCTTTT GCTAGGAGAC ATGTTCCTAA CCCTTGAGAT
  AGGACAGCAA AGGGACAGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37567653	NES08917222	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27353233					SNP	G	G	G	G	G	G	G	G	G	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37567653	NES08917222	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150696199 () rs orientation: forward

Symbol	Name	Function Class
Abhd12	abhydrolase domain containing 12	within coordinates
Gm75588	predicted gene, 75588	1553 bp downstream
Rr52274	regulatory region 52274	1637 bp distal
Rr59011	regulatory region 59011	606 bp proximal
Tssr26719	transcription start site region 26719	1370 bp downstream
Tssr26720	transcription start site region 26720	1427 bp downstream
Tssr26721	transcription start site region 26721	1449 bp downstream
Tssr26722	transcription start site region 26722	1549 bp downstream
Tssr26723	transcription start site region 26723	1639 bp downstream
Tssr26724	transcription start site region 26724	1720 bp downstream
Tssr26725	transcription start site region 26725	1769 bp downstream
Tssr26726	transcription start site region 26726	1828 bp downstream
Tssr26727	transcription start site region 26727	1866 bp downstream