rs27353234 SNP Detail

Summary

• ID
  rs27353234
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150696077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGAGACA GATCGTCCAC
  ATATAGGCAT TCAGTAAAGA GAAAGTAAAT AAATATGCAA ATGAATAGAA AACAACTTGA
  TTTACCACAT TTTTATGAAA GCTGATCTGG AAAAGTATCT GCAAGGGTGA AAGGCTGGAT
  GGAGCTACTA GGCTGGGATG GGCACTTGTG ACTGCTATCT GGCTACATCT CATTCCATCT
  W
  TGTGAGTAAT AGAACTAACT GCCTTGTCCC AGGGGTGGTA CCGACAAACA GGGCTCGGCA
  GGTTATCTGG GTTTTATCAA TTCCAATTAT TTTATAAGGT CAACCAGAGG CTTCTATGGG
  AGATAAAGAG GTAAGAATGA ACATTATGAG GGGTTTAACA AGGACTGCTC AGGGAAGAAT
  GAAGGAGGCT AGTGTTTAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37567654	NES08917219	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27353234					SNP	A	A	A	A	A	A	T	A	A	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37567654	NES08917219	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150696077 () rs orientation: forward

Symbol	Name	Function Class
Abhd12	abhydrolase domain containing 12	within coordinates
Gm75588	predicted gene, 75588	1431 bp downstream
Rr52274	regulatory region 52274	1515 bp distal
Rr59011	regulatory region 59011	728 bp proximal
Tssr26719	transcription start site region 26719	1492 bp downstream
Tssr26720	transcription start site region 26720	1549 bp downstream
Tssr26721	transcription start site region 26721	1571 bp downstream
Tssr26722	transcription start site region 26722	1671 bp downstream
Tssr26723	transcription start site region 26723	1761 bp downstream
Tssr26724	transcription start site region 26724	1842 bp downstream
Tssr26725	transcription start site region 26725	1891 bp downstream
Tssr26726	transcription start site region 26726	1950 bp downstream
Tssr26727	transcription start site region 26727	1988 bp downstream