rs27353239 SNP Detail

Summary

• ID
  rs27353239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150695684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTTCCCC CACCCACCCA
  TTCACTCCTG CCTTACTGCC CTAGCATTCC CCTACACTGG GGTATCGAGC CTCCACAGGA
  CCAAGAGACT CCCCTCCCAT TGATGCCAGA TAAGGCAGTG GAGGCACTGA CTTATACAAT
  AGCTAAAATA GGAGCAGAGT ATGTGGCTCA TGGGCATCAC AACAGAAATG GCCCCCACAT
  R
  GAGCGTTCAT TACTCCATGT TCCATAGATG TGGTCCAGCT CTTATCACGA CCTCTCACAG
  GTTCCTTATA AACAGGACTT GGCTACACAG GTCAGAAACC ATACCTGCAG GTCTCTGGCT
  TCTCCAGACT TTCATTTACT CTAACTACGC TATGCTGTCA TGTATCAGCA ATCAAAAACA
  CCAAGGGGCA TGACTTGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37567659	NES08917213	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27353239					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37567659	NES08917213	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150695684 () rs orientation: forward

Symbol	Name	Function Class
Abhd12	abhydrolase domain containing 12	within coordinates
Gm75588	predicted gene, 75588	1038 bp downstream
Rr52274	regulatory region 52274	1122 bp distal
Rr59011	regulatory region 59011	1121 bp proximal
Tssr26719	transcription start site region 26719	1885 bp downstream
Tssr26720	transcription start site region 26720	1942 bp downstream
Tssr26721	transcription start site region 26721	1964 bp downstream