rs27353701 SNP Detail

Summary

• ID
  rs27353701
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151303045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA
  GAAAGAAAAG AAAGACAAGC TCTGGAGTCA ACCAGTGTGC AGAGAACTGA TACAGAACAG
  W
  ACCAAATTCC TCACAACACC AAGAGGATCT TCCAGATGGC ACCTGCTGGC TGTGCCTCCT
  CAGGAAGAGA CACAAGCTTG TTTAGATTTT CTTTTAAACA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37565520	NES08924493	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27353701					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37565520	NES08924493	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151303045 () rs orientation: forward

Symbol	Name	Function Class
Gm14146	predicted gene 14146	920 bp downstream
Gm14150	predicted gene 14150	816 bp downstream
Rr55801	regulatory region 55801	1644 bp distal
Rr55802	regulatory region 55802	1044 bp distal
Tssr691	transcription start site region 691	1958 bp downstream