rs27353705 SNP Detail

Summary

• ID
  rs27353705
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151302149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCACTGT GGTACCCGGT
  GGTGACCTGG CCAAGGTGCA GAGAGCTGTG TGCATGCTGA GCAACACCAC AGCCACTGCT
  GAGGCCTGGG CTCGCCTAGA TCACAAGTTT GATCTGATGT ATGCCAAGCG TGCCTTTGTG
  CACTGGTATG TGGGTGAGGG CATGGAGGAG GGTGAGTTCT CTGAGGCCCG TGAGGACATG
  R
  CTGCCCTAGA GAAGGATTAT GAGGAGGTTG GTGTGGATTC TGTGGAAGGC AAGGGGGAGG
  AAAAAGAAGA GGAATACTAA GTCCATTCCT TGAGCCCCTG TGTCGTCAAA CTGCTCCAGT
  ATTAGTTGCA GGCACTGATG CCATTTCCAT TCTCTGATCA TGTCTTCTCC ATGTTGTACC
  TCTTAAGTCT TCCATGATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss37565524	NES08924576	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs27353705					SNP	A	A	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37565524	NES08924576	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151302149 () rs orientation: forward

Symbol	Name	Function Class
Gm14146	predicted gene 14146	1816 bp downstream
Gm14150	predicted gene 14150	within coordinates
Rr55801	regulatory region 55801	748 bp distal
Rr55802	regulatory region 55802	148 bp distal
Tssr691	transcription start site region 691	1062 bp downstream
Tssr20717	transcription start site region 20717	1372 bp downstream