rs27353709 SNP Detail

Summary

• ID
  rs27353709
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151301422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG GTTTCCACTG CTGTGGTTGA
  K
  CCCTACAATT CTATCCTCAC CACCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	WSB/EiJ
ss37565528	NES08924572	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	G	T	T	T	G		T
ss147956904	ENSMUSSNP106135	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	WSB/EiJ
rs27353709					SNP	T	T	T	T	T	T	T	G	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37565528	NES08924572	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151301422 () rs orientation: forward

Symbol	Name	Function Class
Gm14150	predicted gene 14150	within coordinates
Rr55801	regulatory region 55801	21 bp distal
Rr55802	regulatory region 55802	178 bp proximal
Tssr691	transcription start site region 691	335 bp downstream
Tssr20717	transcription start site region 20717	645 bp downstream