rs27353711 SNP Detail

Summary

• ID
  rs27353711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151300252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAACCATTG ATAGTTGAGT TGTCATAAGT GTCACCATAG
  GAAACGAGTG TGAAAATTAT CAAAGGACAA AATAATTTTC CAGCAAATAA AATAGACACC
  Y
  TAGCACAGTG CTGGCAGAGC AAACATCTAC ACAACCATTA TAAGACCTAG TGTGGAGATT
  CCTCAAAATG TGAAAGCATG TCTCCTGTGA GGCTCTGCCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37565530	NES08924604	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27353711					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37565530	NES08924604	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151300252 () rs orientation: forward

Symbol	Name	Function Class
Gm14150	predicted gene 14150	624 bp upstream
Rr55801	regulatory region 55801	548 bp proximal
Rr55802	regulatory region 55802	1348 bp proximal
Tssr691	transcription start site region 691	815 bp upstream
Tssr20717	transcription start site region 20717	523 bp upstream