rs27364516 SNP Detail

Summary

• ID
  rs27364516
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93118828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTGCCTT CATCACCAAG
  TTCTTACTGC CCACCTGTGG TGTGCCACTG AGAAAGTATC AAGGAAGCAG AAGGAGTGTG
  CGAAACTGCA TGCATGAAGT ACCTACTGTG TGCCAAATAG CAAGATAGAC AGCACAGTCC
  CATAAGGCCT TGCAAGGCCC TACGTGGTTA TTTGGTTACT TCCTCCTCAC CTGCTTCTGC
  M
  TAACTCCATC TCTGCTCTAG TCACTATCCT CAGCCCTAGG AGCTCACAGC CATCCCTCTG
  CCCACAATCA TGCTACAGAG CACAATCAGG CTGTCTCTGT TCAGATGTCA GCCTGAGGAA
  AAGACAACTA GCTTTTATCA TCATCCTTCA CCACAGCCCC TGAGCTGAAT GTATGTATAT
  ATTTCAATAT ATTTATACAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37599535	NES09089839	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27364516					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37599535	NES09089839	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93118828 () rs orientation: forward

Symbol	Name	Function Class
Rr561146	regulatory region 561146	404 bp distal
Rr561147	regulatory region 561147	1960 bp proximal
Tspan18	tetraspanin 18	Intron