rs27365673 SNP Detail

Summary

• ID
  rs27365673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:97375309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCAAAAG AGCAGTCTCT
  CTTAGGTCAG GATGTGTCAA TGGGGCTCAG TCAGGGAAGG CATCCTTCTG CCTTACACAG
  AACTGTCTTC TCACAGAGCA CTTATCAAGA GAGCAAGGTC TGTTCTTGCA AGGCTCATCT
  ATACAGTGTG ACTTATCTTA CCTCACTGAC TTTCATAAAG GCTTTCTCTC AGACAGTTGT
  R
  CTAGGCTTTA TGCCTTTGAC ATGCATTTTA TATGAACACA ATTTAGCCCA CAGCAGGAGA
  TAAGATAGGT CTATGTTTTA ATATATTCTC ATTATTCTTG TTTACTAGCT ATGAAATTAA
  TCTTTGCCTA CTATTTTCTG ATTTTGTTTG GTTAAATAAG TCACTAAAAG CGATATGAAC
  TCTTTTCCCC TAGTTTTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37588497	NES09083351	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27365673					SNP	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37588497	NES09083351	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:97375309 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrrc4c	leucine rich repeat containing 4C			Intron
				mRNA-UTR
Rr561454	regulatory region 561454			366 bp distal