rs27365681 SNP Detail

Summary

• ID
  rs27365681
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:97373087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGTTTG TTTGTTTGTT
  TGTTTTTAAG CCCCAATGTT CTTTCTGTCT TTCCAACCAC ATACTCCTTA GTTTTCATCT
  TCTTATAATT TACAGATTAC ATGCAACCAG ATACCATTAT TAATGAACTC ATAGGAAAAT
  TGATTAACAT CCTAATGACT TCCTTCCCAA GAACTGAAAA ATATCCTGGA CTTCCTCACA
  W
  TTTCGCTGTC TGCTCATGAT CAGTGTCTTC ACAGAGATTG GCTTTGGCAT CCTATGGGCT
  GCTGTTGTTT GTGGTTGAGA GTGTCTTTTC GTTGCTCTTG TGACTTGTCT ATGAACTCTA
  TCACTCACTA TATGCTGTCA AATATTGACT AGCATGTTGA TGATGCCATT CATTTTTATT
  TTCTCTTTTG GTTTAGTAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37588506	NES09083395	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27365681					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37588506	NES09083395	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:97373087 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrrc4c	leucine rich repeat containing 4C			Intron
				mRNA-UTR
Rr561454	regulatory region 561454			431 bp proximal