rs27365958 SNP Detail

Summary

• ID
  rs27365958
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154301402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTTACATT CATATTTACT TGATTTTAAA GCAATTTTTG
  CATTGTCTTC TTATCTTTGA TTTACAGCCG CACCAGAACC GTTGTTGCCT GCATTGTCTT
  R
  ATTTAATCAT GGGCCAGTTT AGTAGAGCAC CAAGTCTGGA TCTGGGAGGC AGCTTGTGTG
  AATCATTTAC ATATATTTCT GCTTATGTTC CCAAAACTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ	NZW/LacJ
ss37555781	NES08917293	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ	NZW/LacJ
rs27365958					SNP	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37555781	NES08917293	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154301402 () rs orientation: forward

Symbol	Name	Function Class
Cbfa2t2	CBFA2/RUNX1 translocation partner 2	Intron
Rr567835	regulatory region 567835	186 bp proximal