rs27365959 SNP Detail

Summary

• ID
  rs27365959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154300493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTGTAAAA CATTGCCAGT CAGAAAATAC CAAGTTTATA
  CATTTTATCT ATCTAAAGTA TAGTAGAAGC TAAAGGAAGG CATATTTGTT TGATTATGTA
  Y
  GTGGAGATCC TAATTTTTAA ACATATTTAT TTATTTATTT ATTTATTTAA TAGCTATGAA
  TATACTGTAG CTGTCTTCAG ACACACCAGA AGAGGGCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ
ss37555782	NES08917331	PERLEGEN	MM_PANEL2	f	SNP	T			C			C	C
ss45362262	mCV22917420	ABI	CRAMUS_MOUSE	f	SNP		T	C		T	C
ss148031007	ENSMUSSNP5328927	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ
rs27365959					SNP	T	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37555782	NES08917331	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154300493 () rs orientation: forward

Symbol	Name	Function Class
Cbfa2t2	CBFA2/RUNX1 translocation partner 2	Intron
Rr567835	regulatory region 567835	1095 bp proximal