rs27365960 SNP Detail

Summary

• ID
  rs27365960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154300269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGATATGA ATACAGACAT GATGCTGTCA CTAGTCACAT
  GTTATATTTT TGTTTCTTTA CTTAGTTGTA ACACTGAGAT AATAATGTCT CCCAATAGGC
  Y
  GTCCTATAGA CGGTTTGCGA CAAGTAAGGA AATAAAGGTA GTCCTTGATA CTCAGGACTT
  ACAATAAAAA TTACTACTGC ATCAATTAAT ATTGATGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	KK/HlJ	NZW/LacJ
ss37555783	NES08917330	PERLEGEN	MM_PANEL2	f	SNP	C			T		T	T
ss45349243	mCV22917412	ABI	CRAMUS_MOUSE	f	SNP		C	T		C
ss148030996	ENSMUSSNP3379131	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	KK/HlJ	NZW/LacJ
rs27365960					SNP	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37555783	NES08917330	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154300269 () rs orientation: forward

Symbol	Name	Function Class
Cbfa2t2	CBFA2/RUNX1 translocation partner 2	Intron
Rr567835	regulatory region 567835	1319 bp proximal