rs27367798 SNP Detail

Summary

• ID
  rs27367798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93817043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTACACC CAGCTCAAGG
  TCTTCCCAGC AGAACTGTCC TGCTCTACCG CAGTCACCCC AGCTGGCCTG TAACTGCTGT
  CATTGCTGCT CATTCCTGAC CCCTCCAGTG CTCCACATGC TACTGTGTCT TCAGATATCA
  CAGTCTTTGT CTCTCCCACA GCAGAAAAGG CTGTCCAAAC AAAATATGCT TCCCTGTGTT
  Y
  TCTCAGTTAA CAGCAGAGTG TTTGGTCCTC TGCGTCTCTC TGAGCCTCAG AAAAGCTATT
  AAGAAAACCC CTATCTTGTT ACTAAGATAG CTATAAAAAC AAAACATAAC TGAGCAGAAA
  GGGCAAGGGA AACAAAGTGA GCACCTGCTC CCTGCTTCTC ATTTCCCAAG CTCACAGGAA
  GCACTGAGTA CATGGCAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37596517	NES09088950	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27367798					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37596517	NES09088950	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93817043 () rs orientation: forward

Symbol	Name	Function Class
Alkbh3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	within coordinates
Gm27027	predicted gene, 27027	within coordinates
Rr50880	regulatory region 50880	within coordinates
Rr55212	regulatory region 55212	1675 bp proximal
Tssr25307	transcription start site region 25307	1903 bp upstream
Tssr25308	transcription start site region 25308	1853 bp upstream
Tssr25309	transcription start site region 25309	1833 bp upstream