rs27367800 SNP Detail

Summary

• ID
  rs27367800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93816847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCACGGC ACATTCGCCT
  TGCTCAAGGG ACCAGCCATC AGGCAGGAAC AGAAGAGGTG GCCAATACAG GGGTGAATGA
  TGTTCAGGAG CAGTTCCTGT CAAGGTCCCC AGTGCTGTCT CATCCTTTAG CTTTTCTGGG
  GAAGGAGCTA AGTGGGGTTT TTATAGGAAA TTTCAAGTTT TAATTGTGGG CAACTGAGGC
  Y
  ACACCCAGCT CAAGGTCTTC CCAGCAGAAC TGTCCTGCTC TACCGCAGTC ACCCCAGCTG
  GCCTGTAACT GCTGTCATTG CTGCTCATTC CTGACCCCTC CAGTGCTCCA CATGCTACTG
  TGTCTTCAGA TATCACAGTC TTTGTCTCTC CCACAGCAGA AAAGGCTGTC CAAACAAAAT
  ATGCTTCCCT GTGTTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37596519	NES09088948	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27367800					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37596519	NES09088948	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93816847 () rs orientation: forward

Symbol	Name	Function Class
Alkbh3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	within coordinates
Gm27027	predicted gene, 27027	within coordinates
Rr50880	regulatory region 50880	within coordinates
Rr55212	regulatory region 55212	1871 bp proximal
Tssr25307	transcription start site region 25307	1707 bp upstream
Tssr25308	transcription start site region 25308	1657 bp upstream
Tssr25309	transcription start site region 25309	1637 bp upstream