rs27367816 SNP Detail

Summary

• ID
  rs27367816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93815134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATACTGG ATGTTTACTG
  CTGTCATTAC GGTCATCACA GACAAGAAAC TAGGCAATTT CCTTCTCGGG AAAAGGTAAT
  GCACATTCTA CTGCATTTCT CAGGAGCTCA CCCCTCCTGT CCTAAAATGG TTACCCATCG
  TTACTTCAAA ACCTTCCTAT CTTCTCTCTA GGATGCATCA GAACTCATGG ATGGTACAGG
  Y
  TTAACTTTTA GGCATTAGCT TTCCTGCTCT CACAGTCAGG GCAGTGGGGA ATGGCTGTAT
  GCGGCTGCTG CTTAGAGACA CACTGTGACA TCAGTAGACA GATGCTAAGT AACTGAAGAA
  AGTGCCCAGA ATACTCTGCT CCCAGAGTTC CCAGGCAGTA TTCCGTCTAT ACAAGCTCAG
  CCCTTGGGTG TTTTTAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37596535	NES09088979	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27367816					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37596535	NES09088979	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93815134 () rs orientation: forward

Symbol	Name	Function Class
Alkbh3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	within coordinates
Alkbh3os1	alkB homolog 3, opposite strand 1	1214 bp downstream
Gm27027	predicted gene, 27027	within coordinates
Rr50880	regulatory region 50880	1667 bp proximal
Rr63177	regulatory region 63177	735 bp distal
Tssr25307	transcription start site region 25307	within coordinates
Tssr25308	transcription start site region 25308	22 bp downstream
Tssr25309	transcription start site region 25309	68 bp downstream