rs27367821 SNP Detail

Summary

• ID
  rs27367821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93813958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCCCCC ATGGGGAGGT
  AGAGGTGGGA CAGGAGAGCA CTGTGACTCC ATCTGGAACC ATGAAACCAC AATGGAGCTG
  AGAGGCACAA AGGAGTTCCA CATGCAAGAG GCAAGTATCA GCACTGGTGG AAATGAAGCA
  TAAAGATCTC GATTTTTCAA GGGAAAGAAA ATGTCAGATG TATTTTGCAC ATTTAATATC
  Y
  AGCATAGCCG CTAACCACAC CAAAAGGGTG AGCAATTCAG GTTGTCCCTA AGCAGTGGGA
  TAGATAAAGA ATTTGCTTAC CCAGCACATG GTATGAGAGG TAATACGTTT CTCCCTGGCT
  TGTAAATTGA TTTCTCCTAA CACCAGTGAC TTAGAAAACA TTCCTAATTG CAGGAGATGG
  ACAGTTAAAG AAGGCAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37596540	NES09089037	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27367821					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37596540	NES09089037	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93813958 () rs orientation: forward

Symbol	Name	Function Class
Alkbh3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	within coordinates
Alkbh3os1	alkB homolog 3, opposite strand 1	38 bp downstream
Gm27027	predicted gene, 27027	within coordinates
Rr45341	regulatory region 45341	958 bp distal
Rr63177	regulatory region 63177	within coordinates
Tssr25307	transcription start site region 25307	1175 bp downstream
Tssr25308	transcription start site region 25308	1198 bp downstream
Tssr25309	transcription start site region 25309	1244 bp downstream