GAAGGATCTC TCCGCTTTCA GGGAGGACAA CATGGCGTGG ATCAGTAAAC TGTACCGACT CGAGGATGAA GGTGAAATGA CAATGAGAGG GAGACTTCAT GAGCACACAA GGGCAATTCT GAGATCTAGA ACACCCACAG CCCCCATGGG GAGGTAGAGG TGGGACAGGA GAGCACTGTG ACTCCATCTG GAACCATGAA R CCACAATGGA GCTGAGAGGC ACAAAGGAGT TCCACATGCA AGAGGCAAGT ATCAGCACTG GTGGAAATGA AGCATAAAGA TCTCGATTTT TCAAGGGAAA GAAAATGTCA GATGTATTTT GCACATTTAA TATCCAGCAT AGCCGCTAAC CACACCAAAA GGGTGAGCAA TTCAGGTTGT CCCTAAGCAG TGGGATAGAT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37596545 | NES09089032 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | A | A | A | G | A | A | G | A |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27367826 | SNP | A | A | A | A | A | A | A | A | A | G | A | A | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37596545 | NES09089032 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr2:93813823 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Alkbh3 | alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase | within coordinates | ||||||
Alkbh3os1 | alkB homolog 3, opposite strand 1 | within coordinates | ||||||
Gm27027 | predicted gene, 27027 | within coordinates | ||||||
Rr45341 | regulatory region 45341 | 823 bp distal | ||||||
Rr63177 | regulatory region 63177 | within coordinates | ||||||
Tssr25307 | transcription start site region 25307 | 1310 bp downstream | ||||||
Tssr25308 | transcription start site region 25308 | 1333 bp downstream | ||||||
Tssr25309 | transcription start site region 25309 | 1379 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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