rs27368514 SNP Detail

Summary

• ID
  rs27368514
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91762045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA CTGCGTGCGC TCACTCGCTC
  R
  CTGCTCGATG CTTCGCTCCC TCCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ
ss37603640	NES09098578	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ
rs27368514					SNP	A	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37603640	NES09098578	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91762045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11916	CpG island 11916	within coordinates
D2Mit1007	DNA segment, Chr 2, Massachusetts Institute of Technology 1007	169 bp proximal
D2Mit1008	DNA segment, Chr 2, Massachusetts Institute of Technology 1008	264 bp proximal
Dgkz	diacylglycerol kinase zeta	1124 bp downstream
Gm39876	predicted gene, 39876	within coordinates
Gm75422	predicted gene, 75422	within coordinates
Mdk	midkine	within coordinates
Rr560809	regulatory region 560809	1473 bp distal
Rr560810	regulatory region 560810	within coordinates
Rr560811	regulatory region 560811	587 bp proximal
Tssr25211	transcription start site region 25211	1810 bp upstream
Tssr25212	transcription start site region 25212	1796 bp upstream
Tssr25213	transcription start site region 25213	762 bp upstream
Tssr25214	transcription start site region 25214	166 bp upstream
Tssr25215	transcription start site region 25215	30 bp upstream
Tssr25216	transcription start site region 25216	14 bp upstream
Tssr25217	transcription start site region 25217	within coordinates
Tssr25218	transcription start site region 25218	28 bp downstream
Tssr25219	transcription start site region 25219	74 bp downstream
Tssr25220	transcription start site region 25220	255 bp downstream
Tssr25221	transcription start site region 25221	294 bp downstream