rs27368515 SNP Detail

Summary

• ID
  rs27368515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91761004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA AGCCTTTCCC AGGAACCCAG
  R
  TCGGATGATC CAACAGAAAG AGTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37603641	NES09098577	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	G		A	A	A		A	A	A		A
ss45333798	mCV24892500	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G	A
ss146927871	ENSMUSSNP89328	ENSEMBL	ENSEMBL_Sanger	f	SNP			A						A
ss320392922	CHEV_2_91770816	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27368515					SNP	G	G	A	G	A	G	G	G	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37603641	NES09098577	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91761004 () rs orientation: forward

Symbol	Name	Function Class
Chrm4	cholinergic receptor, muscarinic 4	1971 bp downstream
Cpgi11915	CpG island 11915	1896 bp distal
Cpgi11916	CpG island 11916	395 bp proximal
D2Mit1007	DNA segment, Chr 2, Massachusetts Institute of Technology 1007	1210 bp proximal
D2Mit1008	DNA segment, Chr 2, Massachusetts Institute of Technology 1008	1305 bp proximal
Gm39876	predicted gene, 39876	891 bp upstream
Gm75422	predicted gene, 75422	within coordinates
Mdk	midkine	within coordinates
Rr560808	regulatory region 560808	1255 bp distal
Rr560809	regulatory region 560809	432 bp distal
Rr560810	regulatory region 560810	1019 bp proximal
Rr560811	regulatory region 560811	1628 bp proximal
Tssr18929	transcription start site region 18929	983 bp downstream
Tssr25211	transcription start site region 25211	769 bp upstream
Tssr25212	transcription start site region 25212	755 bp upstream
Tssr25213	transcription start site region 25213	260 bp downstream
Tssr25214	transcription start site region 25214	792 bp downstream
Tssr25215	transcription start site region 25215	1002 bp downstream
Tssr25216	transcription start site region 25216	1016 bp downstream
Tssr25217	transcription start site region 25217	1037 bp downstream
Tssr25218	transcription start site region 25218	1069 bp downstream
Tssr25219	transcription start site region 25219	1115 bp downstream
Tssr25220	transcription start site region 25220	1296 bp downstream
Tssr25221	transcription start site region 25221	1335 bp downstream