rs27368620 SNP Detail

Summary

• ID
  rs27368620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90725413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTG TATAGGATTC CATACTGGCC
  Y
  TTACTTTTCA CATGCTGCCA ACCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37605440	NES09110566	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T		T	T	T		T	C	T	T		C
ss45360170	mCV22687921	ABI	CRAMUS_MOUSE	f	SNP		T	C				T
ss146921266	ENSMUSSNP5128762	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss320391448	CHEV_2_90735226	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27368620					SNP	T	T	C	T	T	T	T	T	T	T	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605440	NES09110566	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90725413 () rs orientation: forward

Symbol	Name	Function Class
Gm32514	predicted gene, 32514	1871 bp upstream
Ndufs3	NADH:ubiquinone oxidoreductase core subunit S3	within coordinates
Rr560592	regulatory region 560592	444 bp distal
Tssr25138	transcription start site region 25138	272 bp downstream