rs27368746 SNP Detail

Summary

• ID
  rs27368746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90652246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGGAGT GTCTGAAGAC
  AGCTACAGTA TACACACATA TAATAAATAA ATAAATAAAT AAACAAACAA ACAAACAAAT
  AGATAAATCT TTTAAAAAGA GAGAGAGAAA GAGAGCGATC ATAGCCACAC TCCCATCCCA
  TCATGTGTGC AAATCCACTC TCACACACAG ACACATAGAA CAAATGCATA GCAAGTAAAG
  R
  CCCAGAGCAA TTGGGTAGCT CCCTTCCCAA CCTGGAGGGT TTGGTTTGGT TTGTTTGTTT
  GTTTGTTTTT CGAGACATGG TTTCTCTGTA TAGCCCTGGC TGTCCTGGAA CTCACTCTGT
  AGACCAGGCT GGCCTCGAAC TCAGAAATCC GCCTGCCTCT GCCTCCCAAG TGCTGGGACT
  AAAGGCGTGT GCCACCACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37605566	NES09096880	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27368746					SNP	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605566	NES09096880	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90652246 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agbl2	ATP/GTP binding protein-like 2			Intron
				Noncoding-Transcript-Variant
Rr373531	regulatory region 373531			720 bp upstream
Rr560574	regulatory region 560574			1252 bp proximal
Rr560575	regulatory region 560575			1873 bp proximal