rs27368747 SNP Detail

Summary

• ID
  rs27368747
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90651827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTGTCTA CCCAAGATGG
  GGTTTTCCCA CTAATTCTGT CAGTTGTAAG AATGCGTGGA GCCGTGAGTG ACTTCTGAAC
  TGTGCTAAGT ACAACAGCAC ATAACCACTG TTCCTGGCCC TGTGCTTAGG TAGCAAACAC
  AAACTAGCAC ACACAGGCCA GCCAGACATC TTGCACTGTG GTTCAGGCAT TCCCAGCTCG
  R
  AATTCAGAAC ACCTGGATCT GATGCCCTCT TCTGGTATAT GAAGACAGCT ACGGTGTACT
  CATATAAATA AATAAATCTT AAAAAAAAAA AAAAAAAGAG GTGCTGGTGA GAAGGCTCAG
  CGGTTAAGAG CGCCGACTGC TCTTCCAAAG GTCCTGAGTT CAAATCCCAG CAACCACCTG
  TTGGCTCACA ACCATCCGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37605567	NES09096889	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27368747					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605567	NES09096889	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90651827 () rs orientation: forward

Symbol	Name	Function Class
Agbl2	ATP/GTP binding protein-like 2	within coordinates
Rr373531	regulatory region 373531	1139 bp upstream
Rr560574	regulatory region 560574	1671 bp proximal