rs27368750 SNP Detail

Summary

• ID
  rs27368750
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90651648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCATGGA GAGTGGGGGG
  TGGCAAAAGC TGTAGGCCTG GCTTGGGCTT CTGAAACTGC AAAGCCCAAC CCAAGTGATG
  CACTTCCTCC ACCAACAAGG CCACATCTAC TCCAAAAAGG CCATATCTTC TAATGTTACT
  CCCTAAGCAT TCAAATACAT GAGCCTATGA GGGCCACCAT GCCTGTCTAC CCAAGATGGG
  K
  TTTTCCCACT AATTCTGTCA GTTGTAAGAA TGCGTGGAGC CGTGAGTGAC TTCTGAACTG
  TGCTAAGTAC AACAGCACAT AACCACTGTT CCTGGCCCTG TGCTTAGGTA GCAAACACAA
  ACTAGCACAC ACAGGCCAGC CAGACATCTT GCACTGTGGT TCAGGCATTC CCAGCTCGGA
  ATTCAGAACA CCTGGATCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37605570	NES09096886	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		T	G	T	T		G
ss320391264	CHEV_2_90661461	CHEVERUD	SCREENING_POP	f	SNP										T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27368750					SNP	G	G	G	G	G	G	G	G	G	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605570	NES09096886	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90651648 () rs orientation: forward

Symbol	Name	Function Class
Agbl2	ATP/GTP binding protein-like 2	within coordinates
Rr373531	regulatory region 373531	1318 bp upstream