rs27368751 SNP Detail

Summary

• ID
  rs27368751
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90651254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATTTGTG AACAAACTAT
  ACATAAGACA TTAATGAATT TCATTCATGT TTAGACTTGG GTTTCATCCC CAAGACATTT
  TGTTAGATAT GTGCAAAAAG TCTAAGATCC TAAAACGTAC ATGATAGAAA GCGCTTCTGG
  CCCTGAGCCT TTCAGATAAA AGATGTTGAA CTGGTGACGT TCCCTAAAAA TTCCAGTTCG
  M
  GTTTGACATG TTGTCTCTAT CAATGTTCTA TTGCTGGGAA GAGACACCAC GACCATGGCA
  AATCTTATAA ATGAGAGCAT TTAACTGGGG CTGGCTTACA GTTCAGAGGT TCAATCCTTT
  GTCGTCATGG CAGGAAGCAT GCCAGCATGC AGGCAGACAT GGTGCTGGAG AGGAACTGAG
  AGTTCTACAT GTAAATCCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37605571	NES09096914	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A		C	A	C		A
ss320391257	CHEV_2_90661067	CHEVERUD	SCREENING_POP	f	SNP											C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27368751					SNP	A	A	A	A	A	A	C	A	A	A	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605571	NES09096914	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90651254 () rs orientation: forward

Symbol	Name	Function Class
Agbl2	ATP/GTP binding protein-like 2	within coordinates
Rr373531	regulatory region 373531	1712 bp upstream