rs27368752 SNP Detail

Summary

• ID
  rs27368752
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90651180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAACCAC TGAGCCGTCT
  CTCCAACTCC CCCAAACCAT TTTTATGATG AAAATAATGT GTCAAATTCC CTTCTGGATT
  TGTGAACAAA CTATACATAA GACATTAATG AATTTCATTC ATGTTTAGAC TTGGGTTTCA
  TCCCCAAGAC ATTTTGTTAG ATATGTGCAA AAAGTCTAAG ATCCTAAAAC GTACATGATA
  R
  AAAGCGCTTC TGGCCCTGAG CCTTTCAGAT AAAAGATGTT GAACTGGTGA CGTTCCCTAA
  AAATTCCAGT TCGAGTTTGA CATGTTGTCT CTATCAATGT TCTATTGCTG GGAAGAGACA
  CCACGACCAT GGCAAATCTT ATAAATGAGA GCATTTAACT GGGGCTGGCT TACAGTTCAG
  AGGTTCAATC CTTTGTCGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37605572	NES09096913	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27368752					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605572	NES09096913	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90651180 () rs orientation: forward

Symbol	Name	Function Class
Agbl2	ATP/GTP binding protein-like 2	within coordinates
Rr373531	regulatory region 373531	1786 bp upstream