rs27369661 SNP Detail

Summary

• ID
  rs27369661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153623460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTACCTCT GGATCTGCTT CTCTCGGTAG TGAATGGCTT
  TTGGGACCTC CACATGGCTT GAGAAGTCCC TGGATTCTAC AAATTCTGGA TTTAAGCTAG
  Y
  AATCTTCATG GCTTCAGTGG GCCAGTTTCT TTCCATCAAT TCAGGAAGGC TCCACTGTAA
  ACTTATGGAA AATGTCTGTG GGAAAGGGGG CACTCATGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37558883	NES08914929	PERLEGEN	MM_PANEL2	f	SNP	C			T	T	T	T		T		T	T	T	T	T	C
ss45379654	mCV23545985	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		C
ss148004029	ENSMUSSNP5982961	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27369661					SNP	C	C	T	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37558883	NES08914929	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153623460 () rs orientation: forward

Symbol	Name	Function Class
Efcab8	EF-hand calcium binding domain 8	within coordinates
Gm75501	predicted gene, 75501	1807 bp upstream
Rr567738	regulatory region 567738	1818 bp distal
Rr567739	regulatory region 567739	1717 bp distal