rs27369662 SNP Detail

Summary

• ID
  rs27369662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153622787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTCTCCA GCCCTGCCAG
  GTCCCTTTCA AGGCCAATAC AATTCATATA GTTAACAGAA ATGTACTTTA GATACACTTT
  TGCATTAGGT TTCTGCCGTT TTCCGTGGCT CTTTTTCCAG TACCACATCC TGTCTCTTGT
  GTTTCCTTTT TCTATTCTTT AAATGTATCT ATACCCTAAG CTTATGAGTC CTCAGATTTC
  Y
  AGAGATTTGC GTTTTATTTC TAGATGAGTC GTCACAGCTT GCTTCATGCC CTCGTCCCTC
  CATGCTCCTC TTTCTGGAGA AGTTTCTGCC TTTTCTCTTA GTTGTCCTTA CTTTCGATGT
  CAAGACAGCA CGGGGGAAGA CCTGGGCCGG TTCCCCTCCC CACTGCCCTT TCTCATGTGC
  CTACTGCTCT TCTTCCCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss37558884	NES08914928	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T		C		T
ss320565087	CHEV_2_153606603	CHEVERUD	SCREENING_POP	f	SNP							C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs27369662					SNP	T	T	T	C	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37558884	NES08914928	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153622787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	1513 bp distal
Efcab8	EF-hand calcium binding domain 8	within coordinates
Gm75501	predicted gene, 75501	1134 bp upstream
Rr567738	regulatory region 567738	1145 bp distal
Rr567739	regulatory region 567739	1044 bp distal
Tssr20916	transcription start site region 20916	1632 bp downstream
Tssr20917	transcription start site region 20917	1616 bp downstream
Tssr20918	transcription start site region 20918	1588 bp downstream