rs27369663 SNP Detail

Summary

• ID
  rs27369663
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153622759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGCGGG AGTTTTTAAC
  TGCTGAGCCA TCTCTCCAGC CCTGCCAGGT CCCTTTCAAG GCCAATACAA TTCATATAGT
  TAACAGAAAT GTACTTTAGA TACACTTTTG CATTAGGTTT CTGCCGTTTT CCGTGGCTCT
  TTTTCCAGTA CCACATCCTG TCTCTTGTGT TTCCTTTTTC TATTCTTTAA ATGTATCTAT
  R
  CCCTAAGCTT ATGAGTCCTC AGATTTCTAG AGATTTGCGT TTTATTTCTA GATGAGTCGT
  CACAGCTTGC TTCATGCCCT CGTCCCTCCA TGCTCCTCTT TCTGGAGAAG TTTCTGCCTT
  TTCTCTTAGT TGTCCTTACT TTCGATGTCA AGACAGCACG GGGGAAGACC TGGGCCGGTT
  CCCCTCCCCA CTGCCCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss37558885	NES08914927	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	A		A		G		A
ss148004009	ENSMUSSNP2716620	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				A
ss320565086	CHEV_2_153606575	CHEVERUD	SCREENING_POP	f	SNP									G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs27369663					SNP	A	A	G	A	A	A	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37558885	NES08914927	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153622759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	1485 bp distal
Efcab8	EF-hand calcium binding domain 8	within coordinates
Gm75501	predicted gene, 75501	1106 bp upstream
Rr567738	regulatory region 567738	1117 bp distal
Rr567739	regulatory region 567739	1016 bp distal
Tssr20916	transcription start site region 20916	1604 bp downstream
Tssr20917	transcription start site region 20917	1588 bp downstream
Tssr20918	transcription start site region 20918	1560 bp downstream