rs27369664 SNP Detail

Summary

• ID
  rs27369664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153622632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATGTATG TCTATGTATT
  GTGGGTGTAG TGCCTAAGGA GGTCAGAGGA GAACATCAGA TCCTCTAGAA CAGTAGTTAC
  AGTCGGTTGT GGGTTGCCAT CTTGGCTGCT AGGAATTGAG TGCAGCTCCT CTGCGGGAGT
  TTTTAACTGC TGAGCCATCT CTCCAGCCCT GCCAGGTCCC TTTCAAGGCC AATACAATTC
  R
  TATAGTTAAC AGAAATGTAC TTTAGATACA CTTTTGCATT AGGTTTCTGC CGTTTTCCGT
  GGCTCTTTTT CCAGTACCAC ATCCTGTCTC TTGTGTTTCC TTTTTCTATT CTTTAAATGT
  ATCTATACCC TAAGCTTATG AGTCCTCAGA TTTCTAGAGA TTTGCGTTTT ATTTCTAGAT
  GAGTCGTCAC AGCTTGCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37558886	NES08914926	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	G		A		G	G		A
ss148003999	ENSMUSSNP2271308	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				A
ss320565083	CHEV_2_153606448	CHEVERUD	SCREENING_POP	f	SNP									G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27369664					SNP	A	A	G	A	A	G	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37558886	NES08914926	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153622632 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	1358 bp distal
Efcab8	EF-hand calcium binding domain 8	within coordinates
Gm75501	predicted gene, 75501	979 bp upstream
Rr567738	regulatory region 567738	990 bp distal
Rr567739	regulatory region 567739	889 bp distal
Tssr20916	transcription start site region 20916	1477 bp downstream
Tssr20917	transcription start site region 20917	1461 bp downstream
Tssr20918	transcription start site region 20918	1433 bp downstream