rs27369665 SNP Detail

Summary

• ID
  rs27369665
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153622013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCCAGTTC AATGGGTTGC ATTACGGGCC ACCTTGGTTT
  AAGGGAAGGT AGGACCCTCC CCCCTTTTCA CTGCCATAGA GTGAGCTGGA GGGTAGATGT
  K
  GATGAACAAG GGTGCAAGGG CCACCTTCTT CCTTTGTTCT GTTTTGAAGA GGTAGTTGGT
  TGTCCCAGCC TGAAAAAAAA AATCTTTCTT TTTTCTTTCC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37558887	NES08914996	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27369665					SNP	T	G	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37558887	NES08914996	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153622013 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	739 bp distal
Efcab8	EF-hand calcium binding domain 8	within coordinates
Gm75501	predicted gene, 75501	360 bp upstream
Rr567738	regulatory region 567738	371 bp distal
Rr567739	regulatory region 567739	270 bp distal
Tssr20916	transcription start site region 20916	858 bp downstream
Tssr20917	transcription start site region 20917	842 bp downstream
Tssr20918	transcription start site region 20918	814 bp downstream