rs27369666 SNP Detail

Summary

• ID
  rs27369666
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153622004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGGAGGA CCCCAGTTCA ATGGGTTGCA TTACGGGCCA
  CCTTGGTTTA AGGGAAGGTA GGACCCTCCC CCCTTTTCAC TGCCATAGAG TGAGCTGGAG
  K
  GTAGATGTTG ATGAACAAGG GTGCAAGGGC CACCTTCTTC CTTTGTTCTG TTTTGAAGAG
  GTAGTTGGTT GTCCCAGCCT GAAAAAAAAA ATCTTTCTTT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37558888	NES08914995	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27369666					SNP	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37558888	NES08914995	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153622004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	730 bp distal
Efcab8	EF-hand calcium binding domain 8	within coordinates
Gm75501	predicted gene, 75501	351 bp upstream
Rr567738	regulatory region 567738	362 bp distal
Rr567739	regulatory region 567739	261 bp distal
Tssr20916	transcription start site region 20916	849 bp downstream
Tssr20917	transcription start site region 20917	833 bp downstream
Tssr20918	transcription start site region 20918	805 bp downstream