rs27369672 SNP Detail

Summary

• ID
  rs27369672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153621263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAGACGAG GTTAACGTCT CATCTCGCAC AGCTGTGCCT
  TCTGAGCCCT TCCCCTGGAG ACATTGTTCT CTGTGCCCCC CTTTGCTTCT GCTCTGTTAT
  Y
  CTTCCTTGAT TCTCGTAGAG GAGCTTGGGA GTGCGCTCCC TGTTCCTAAA AGGACTCCAA
  ACCGTATTTC CGTTCTTCCA AGGTCTGAAC TGGCATCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37558894	NES08914989	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C		C		T	T		T
ss148003948	ENSMUSSNP5888719	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss320565066	CHEV_2_153605079	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27369672					SNP	T	T	C	C	T	C	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37558894	NES08914989	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153621263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	within coordinates
Efcab8	EF-hand calcium binding domain 8	588 bp upstream
Gm75501	predicted gene, 75501	within coordinates
Rr567738	regulatory region 567738	within coordinates
Rr567739	regulatory region 567739	380 bp proximal
Tssr20916	transcription start site region 20916	108 bp downstream
Tssr20917	transcription start site region 20917	92 bp downstream
Tssr20918	transcription start site region 20918	64 bp downstream