rs27369674 SNP Detail

Summary

• ID
  rs27369674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153620770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTAGCCT TTGGTAGGCA
  GAACCAGGAC ACTCCTTATC CTTGATCACC AACTCAAGGG ATCACCAGTG TGCACTGTGT
  GGCTCCACAG AGCAGGAAGA TGAGCGAGTG GAAGTAGAAA TCAAAGCCCA GCCAGCTTTG
  GACCTCCAAA CAGGAAAAGG TTGGAAATGA GAAGCAGGCC TTGGGTGAGT CTGGCAACCG
  Y
  GCTGCTTAGG CGTGAGACGA AGCCCAGCAA AGTGCCAACA CTAAAGAGAT CTCTGTCCAA
  CCAAAAGGGG GTTAAAAACT AGGGCCTGGC CAAGACCTGG AAATCCACTT CAGCTCCAGG
  GAGAAGACAA AGGGAAAAAT TCCAAAACTA GAGGTGTTAG TAGAAACCAA ATCGCTGTAG
  TCCTAGGCGA AGGAGCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37558896	NES08914987	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	C	T		T		C	C	C		T
ss148003929	ENSMUSSNP2540239	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
ss320565061	CHEV_2_153604586	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27369674					SNP	T	T	C	T	T	C	T	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37558896	NES08914987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153620770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	160 bp proximal
Efcab8	EF-hand calcium binding domain 8	1081 bp upstream
Gm75501	predicted gene, 75501	within coordinates
Rr567738	regulatory region 567738	within coordinates
Rr567739	regulatory region 567739	873 bp proximal
Tssr20916	transcription start site region 20916	377 bp upstream
Tssr20917	transcription start site region 20917	390 bp upstream
Tssr20918	transcription start site region 20918	418 bp upstream