rs27370021 SNP Detail

Summary

• ID
  rs27370021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152140642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTCTGT GTTACTAGGG
  ACTGTAACAA CAGTCTTAAC AAGAGAACAA GTTACCTAGG CCAAAACTCA CTTGTCTTTC
  TGCCTGACTT GCAGTTGACT GTAGCTCCAA AGCTCTGTTT GTGTGTCTCA TGTCATAGCT
  ACATAGATAA GTCACCAGGA CTCTTAACTC TATTTGTGTT TCACCTTTGT CATGAGCACA
  R
  TTGTGGACTG TTCTCTCAGA ATAGAACATT ACTGAGGTCC TCTGTTCAGT ACCTCTTCTA
  GAACTTCATA TGCCATGTGA TATTGTCACT TAAGTCTAAA CTTCCTTCTG GTGGTGTCTG
  ACTTACCTTA ACTCTAGTGT CTAGTGTTCT GTAGATGTTC TGTAGATGTG TATGTGCATA
  TGTAGGTTGA CCTGACCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37562951	NES08919444	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27370021					SNP	G	G	G	G	G	G	A	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562951	NES08919444	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152140642 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tbc1d20	TBC1 domain family, member 20			Intron
				Noncoding-Transcript-Variant