rs27370466 SNP Detail

Summary

• ID
  rs27370466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153780292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGACTGT GGCCACTTTA
  TAAAGCTGAT CTGTGACCAG ACTCAGCCCA CAGCAGAGGC CTGGGCAACA GACCTCTGAG
  GATTCACTTG CACACCCCCT CAAGGGTAAG GAGGAGTCCC ATCCCTGTCA CAGGCCCAGG
  CTGGTAGGGG AGGCTGAGAA ATGAGAAACC CCACCCTGCA GGCTGTAGGG GAGCTCTGCC
  R
  GGAGTCAGGA CCTCAGATAG CAATAGGCCC AAATCAGGAC ACACATATGT ATGAAAAAGC
  TGTGCCCAGC TTTCCCAGGG GTGTGGGCCT TCCGGGATTT TTATTACCTC CGCGATGCTT
  TTCAGTTACT TGCTAGTGCT AGAAACACCT CTGATGATTC CCATTTAAAA AACAACAAAA
  CAAAAACAAC GCAGAGTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37557790	NES08910126	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27370466					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557790	NES08910126	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153780292 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	within coordinates
Tssr20927	transcription start site region 20927	149 bp downstream