rs27370467 SNP Detail

Summary

• ID
  rs27370467
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153779948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGAACA GGGTCACAGA
  GCAAAACTCA GTCCTGTGAG GTGGAGCAGG TCCAATCTAC CCACCAGGGC ACCTAGAATG
  GGAAATATCT GCCTTGAGGC GGGATTAGAA GCCAGATGTG CTCACCTGAA GGCCTGGGAT
  CTCCAGGAAC ATAGCCAGGT CAGGGCGATA AAGCCCAGCT CATGTGACAC CATCCGGAGC
  K
  GAACACACTT CTTGGAATTA GCCACAAACC ACAAACTCTT GTGGTTTTGG GGCTCAGTGC
  TCAAGTTGTA GAGAAAATCT GAATTCCGGT CTTATAATTC TAGTCAGTCA TAATTACCTG
  GCCCTTCCCA GTCCGGGTCC CCACTCAGAC TGTGGCCACT TTATAAAGCT GATCTGTGAC
  CAGACTCAGC CCACAGCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37557793	NES08910192	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T	G	T	G	G	T		G	G	G	G		T
ss148010302	ENSMUSSNP2202578	ENSEMBL	ENSEMBL_Sanger	f	SNP								G
ss320566507	CHEV_2_153763764	CHEVERUD	SCREENING_POP	f	SNP										G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27370467					SNP	T	G	T	T	G	T	G	G	T	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557793	NES08910192	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153779948 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	189 bp upstream
Tssr20927	transcription start site region 20927	190 bp upstream