rs27370468 SNP Detail

Summary

• ID
  rs27370468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153779884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGAGTC TCCGCTGTGA
  AGCGGGTATT ACCCCCATTC GTCCTATAGA GACAGAATAG ACTTGGAGAG AACAGGGTCA
  CAGAGCAAAA CTCAGTCCTG TGAGGTGGAG CAGGTCCAAT CTACCCACCA GGGCACCTAG
  AATGGGAAAT ATCTGCCTTG AGGCGGGATT AGAAGCCAGA TGTGCTCACC TGAAGGCCTG
  R
  GATCTCCAGG AACATAGCCA GGTCAGGGCG ATAAAGCCCA GCTCATGTGA CACCATCCGG
  AGCTGAACAC ACTTCTTGGA ATTAGCCACA AACCACAAAC TCTTGTGGTT TTGGGGCTCA
  GTGCTCAAGT TGTAGAGAAA ATCTGAATTC CGGTCTTATA ATTCTAGTCA GTCATAATTA
  CCTGGCCCTT CCCAGTCCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37557794	NES08910191	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	G		A	A	A	A		G
ss148010295	ENSMUSSNP2180725	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss320566506	CHEV_2_153763700	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27370468					SNP	A	A	G	A	A	A	A	A	G	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557794	NES08910191	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153779884 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	253 bp upstream
Tssr20927	transcription start site region 20927	254 bp upstream