GACGAGAGCT GGCTGGTGTG TGGCACTCAC TGGATGGTTC TCTCAGCTTT GCTGTACACG TGAATTCTTT CCCCTCATGA TGAAACCCTT GAGTGGAGGG R TCTTCTGTAG CTCTAAAACA TTCTACCTGT GAGCTGACCC ACACGAGAGC AGTTAGAGCC ATAGCTACCT CCCAGAGTCT CCGCTGTGAA GCGGGTATT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37557796 | NES08910189 | PERLEGEN | MM_PANEL2 | f | SNP | G | A | G | G | A | G | A | G | A | A | G | ||
ss148010265 | ENSMUSSNP144456 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | A | |||||||||||
ss320566500 | CHEV_2_153763430 | CHEVERUD | SCREENING_POP | f | SNP | A | G | |||||||||||
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs27370470 | SNP | G | A | G | G | A | G | A | G | A | A | A | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37557796 | NES08910189 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr2:153779614 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Bpifb4 | BPI fold containing family B, member 4 | 523 bp upstream | ||||||
Rr567756 | regulatory region 567756 | 1999 bp distal | ||||||
Tssr20927 | transcription start site region 20927 | 524 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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