rs27370471 SNP Detail

Summary

• ID
  rs27370471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153779602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGGTGAGG CTGACGAGAG CTGGCTGGTG TGTGGCACTC
  ACTGGATGGT TCTCTCAGCT TTGCTGTACA CGTGAATTCT TTCCCCTCAT GATGAAACCC
  Y
  TGAGTGGAGG GGTCTTCTGT AGCTCTAAAA CATTCTACCT GTGAGCTGAC CCACACGAGA
  GCAGTTAGAG CCATAGCTAC CTCCCAGAGT CTCCGCTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37557797	NES08910188	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	T		T		C	C		T
ss148010260	ENSMUSSNP5496717	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
ss320566499	CHEV_2_153763418	CHEVERUD	SCREENING_POP	f	SNP									C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27370471					SNP	T	C	T	T	C	T	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557797	NES08910188	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153779602 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	535 bp upstream
Rr567756	regulatory region 567756	1987 bp distal
Tssr20927	transcription start site region 20927	536 bp upstream