rs27370475 SNP Detail

Summary

• ID
  rs27370475
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153779245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTCTTGG GTGTCAAGGG
  AAGCCTGGGT AGAAGACTGG GCAACTGGTG CCTCTATGGG AATAGGGAGT GATGGGGGAA
  AGGAAGGTGG GAACTTTGAG TGAGGGAATG TTCTATAGTG TGGTGAGATG CAGGCTACAC
  AAATACATAA AATCATCATA GGCTCGGGTT TTCACTGTGG AAATTTATAT ACAAAATCGT
  W
  GCCTGTGTGT GGAGGTGGGT AGTGTCACAG TCGGCTGTCA GCACAAAATC AGAGGTCCGA
  GGGCTCACTA GTGTCGTGTA GAAAGTCTTG GATTCAATCC ACAGCATCAC ACAGACCAAG
  TATGGTGGTG ACTGGCTGCA ATCCCAGCGA GGTGAATGCA GGATGCTTAG GTTATCCTCT
  GCTACATGGT GAACTTGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37557801	NES08910210	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27370475					SNP	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557801	NES08910210	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153779245 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	892 bp upstream
Rr567755	regulatory region 567755	1876 bp distal
Rr567756	regulatory region 567756	1630 bp distal
Tssr20927	transcription start site region 20927	893 bp upstream