rs27370477 SNP Detail

Summary

• ID
  rs27370477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153779209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGTGAGA GCATAAGGAG
  AAGACGGGGT GGGGGTGGAG TCTTGGGTGT CAAGGGAAGC CTGGGTAGAA GACTGGGCAA
  CTGGTGCCTC TATGGGAATA GGGAGTGATG GGGGAAAGGA AGGTGGGAAC TTTGAGTGAG
  GGAATGTTCT ATAGTGTGGT GAGATGCAGG CTACACAAAT ACATAAAATC ATCATAGGCT
  Y
  GGGTTTTCAC TGTGGAAATT TATATACAAA ATCGTAGCCT GTGTGTGGAG GTGGGTAGTG
  TCACAGTCGG CTGTCAGCAC AAAATCAGAG GTCCGAGGGC TCACTAGTGT CGTGTAGAAA
  GTCTTGGATT CAATCCACAG CATCACACAG ACCAAGTATG GTGGTGACTG GCTGCAATCC
  CAGCGAGGTG AATGCAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37557803	NES08910208	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	T	C	C	T	C		T	T	T	C		C
ss148010235	ENSMUSSNP4007650	ENSEMBL	ENSEMBL_Sanger	f	SNP								T
ss320566493	CHEV_2_153763025	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27370477					SNP	C	T	C	C	T	C	C	T	C	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557803	NES08910208	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153779209 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	928 bp upstream
Rr567755	regulatory region 567755	1840 bp distal
Rr567756	regulatory region 567756	1594 bp distal
Tssr20927	transcription start site region 20927	929 bp upstream