rs27370479 SNP Detail

Summary

• ID
  rs27370479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153778820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGGTGGT AAAAAACAGG TGTGAAAACT GGGCCTGGGC
  TGGGCTGGGT GCGGGCAGCA GAAGGCCTCA GTGAGTGCTC AGGCCAGTTG GGGCTCGGTC
  R
  TCATTTGTGG TTACACTGGC AACTGCACTT ATGCTGGGCT CTGAGCTGGT CACCCTCCTG
  ATTTTCCTGG AGAATTCACA TCTCAGATGG GTCCAGGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37557805	NES08910247	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	G	A	A	G	A		G		G	G	A		A
ss148010207	ENSMUSSNP4816687	ENSEMBL	ENSEMBL_Sanger	f	SNP								G				G
ss320566487	CHEV_2_153762636	CHEVERUD	SCREENING_POP	f	SNP										G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27370479					SNP	A	G	A	A	G	A	A	G	A	G	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37557805	NES08910247	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153778820 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	1317 bp upstream
Rr567755	regulatory region 567755	1451 bp distal
Rr567756	regulatory region 567756	1205 bp distal
Tssr20927	transcription start site region 20927	1318 bp upstream