rs27371518 SNP Detail

Summary

• ID
  rs27371518
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91192904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAGGACA GTGATATTTG
  TTGGCCTGTC ATTAAATGTA ATGCATGGTG GAACAAGCGT CAGAGGAGGG GTCATCTTTT
  AATGGGTAGG AGTGAGGCCA TGGAGGGAAC GGGGACTCTG AAGAACTTTT AAAAGGCATT
  CTTGAGCTGA GGCTAGATGA GCAGGAGAGA GGCAGAGTGG GGTGAACTTC CACCCAGGAG
  R
  ACAGAATTTT CAAAGGTGTG TGAGGAGAGT CTGTGATCTC TTGTGGCTGC AAAGACTCTT
  GGGATCATGA GAGGCCACTG GGTAGTGACA GGATCCCTAT TTCTTTAGCA GGCAGTATAT
  AACTACTGAT GTTCTGGAGT GGCACAGCAG AGCTGTGCTA GAGAGGGCTG GACTTAGAAG
  ACTTCTCATG GAGGTCGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37604642	NES09099967	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27371518					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604642	NES09099967	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91192904 () rs orientation: forward

Symbol	Name	Function Class
Cstpp1	centriolar satellite-associated tubulin polyglutamylase complex regulator 1	within coordinates
Rr373536	regulatory region 373536	278 bp downstream
Rr560718	regulatory region 560718	987 bp distal
Rr560719	regulatory region 560719	760 bp proximal