rs27371522 SNP Detail

Summary

• ID
  rs27371522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91192027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCATTTC CTGGCAAGAG
  AGGGAGGAGC TGCCTTCTGG TTAGACTGGG GATTTGGCCA CTTAAAGATG ATAGTAAATG
  GTTCTGGTAG AAACCTCACT TTCTGTCTAT ATTTGACGGC TAAATTAAAA TTTGAACCAC
  TGTTTCTACG ACAAACTGAA CTAATTGGAA ATGGACTATA AATCAATGCA GCACAGCAGG
  Y
  ATTCATTAAT TTATGCACCC AGCATCTACT GAGCACATAC AATAAGCAAG TCACAGAATG
  GGTGATTCAG AAATAAAATA TGGAGTCTCA GAGCTCAAGG GAGCTGACAA TGACTATGAC
  CACAATGACA AGAGCATCCG AGTTTGATGG AGCAGAACTA TGTACTGGCA CACCTAAGTG
  CGTTAGTCCA TTATCCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37604646	NES09099978	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27371522					SNP	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604646	NES09099978	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91192027 () rs orientation: forward

Symbol	Name	Function Class
Cstpp1	centriolar satellite-associated tubulin polyglutamylase complex regulator 1	within coordinates
Rr373536	regulatory region 373536	within coordinates
Rr560718	regulatory region 560718	110 bp distal
Rr560719	regulatory region 560719	1637 bp proximal