rs27371907 SNP Detail

Summary

• ID
  rs27371907
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152611227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCGAGGCC AGAAGCTGGG GATCATGGAA TCTGTAAGAC
  TCATCTCTCC AGGCCCATCT CCAGGCTTGC ACATGGTCGT GCTTGTTGTT CCGTGTGCTT
  W
  AGCTACTCTG GTGTCCCTGT GAATCCGGGT CTCCAGTTCT CACAGCAACA GCAGGCAGAT
  GGGCTAGATG GGACAGGAGC GCTTGGGGCT TCCCTCTGTC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ
ss37561732	NES08907043	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ
rs27371907					SNP	A	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561732	NES08907043	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152611227 () rs orientation: forward

Symbol	Name	Function Class
Rr567462	regulatory region 567462	1066 bp distal
Rr567463	regulatory region 567463	299 bp proximal