rs27371908 SNP Detail

Summary

• ID
  rs27371908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152611216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCCGAGG CTCTCTGAGG
  CCATAGTTAT GGGTCACTGT TTTGCTTTTC AGGGGCAGCC ATGATAATCT ACAGGCTAGG
  TTTAAACAAT GGAAGTGTGT ATTTTCACTG TTCTCGAGGC CAGAAGCTGG GGATCATGGA
  ATCTGTAAGA CTCATCTCTC CAGGCCCATC TCCAGGCTTG CACATGGTCG TGCTTGTTGT
  Y
  CCGTGTGCTT AAGCTACTCT GGTGTCCCTG TGAATCCGGG TCTCCAGTTC TCACAGCAAC
  AGCAGGCAGA TGGGCTAGAT GGGACAGGAG CGCTTGGGGC TTCCCTCTGT CATTCCATTT
  GAACTTAGGG TTCAGAGTAG CCTTGGAGTT ACCATCCTCC TGCCTCAGCC ATCAAGCATG
  TGCCAGCCGC CGCACTCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37561733	NES08907042	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T	T	C	C	C	C	T
ss147974177	ENSMUSSNP2991055	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27371908					SNP	T	C	T	T	T	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561733	NES08907042	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152611216 () rs orientation: forward

Symbol	Name	Function Class
Rr567462	regulatory region 567462	1055 bp distal
Rr567463	regulatory region 567463	310 bp proximal