rs27371913 SNP Detail

Summary

• ID
  rs27371913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152610710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCTGAGC ATTTGGGAGG
  CTGAGGCAGG AGGGTTGCAA GTTCCTAAGT CAACCTGGGC TTCATGGTGA GCCCCCATCT
  CAAGTAAACA AAGAAGGAAG AAAGAGAAAG AAAACAAGCT GGCTTGATGA TTGGTATATT
  TCAGCCCAGA TTTGACTCTG CTTCTCCGGC AGCTGTTTAG ACATAGCTGA ACAGGTTAAA
  Y
  GTGCAGGCAG GAAAACTTGT TTGTTCAGTG AATTACGAGG GAGTGATGTT ACAGGACAGA
  AGAGAAAATT GTCAAATGTG GTTCAGGGGG AAACTGCGAG CTGTACTGCA GTCTCTTCGA
  CAGCAGCACG GGCGTGGCTC TGTGGTGGAT CCTGGATTAG AACTTCACCG CCACCATCCG
  AGAGAGAGAG AGAGAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss37561738	NES08907093	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	T	T	T	C	T
ss147974150	ENSMUSSNP303665	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs27371913					SNP	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561738	NES08907093	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152610710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12465	CpG island 12465	1961 bp distal
Rr567460	regulatory region 567460	1708 bp distal
Rr567462	regulatory region 567462	549 bp distal
Rr567463	regulatory region 567463	816 bp proximal