rs27371915 SNP Detail

Summary

• ID
  rs27371915
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152609979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGCCAG TAGGAACAGA
  AGAGACAGAA CAAGAAAGGC GGGAGCAGAC AGTCCTCTGA GACCTACAGG TGCTGCTGCT
  TTTACTGAGG AGGCGTGTTT GTAGGAAAGC ATTCGAGGAG CGATCCGAGG AGGTGTCAGG
  ACTAGAGCAC AGCGGCTCTC TGGTCCCACA GTCCCCTTTA TCACTCGCTG CCTTTGGGCC
  M
  TCAGTGTGGG AGGAGAGAGG ATGGGTAAAC TGGTCCCACC CTCCAGAACT GCCAGCTTAT
  CAAGTAGGAC CCACAGGTGG GAGTAATGAG GTAGAAATTC TAAATGGGCC TGGCGGTGGT
  GGCACATGCC TTTAATCCCA GCACTTGGGA GGCAGAGGCA GGAGGATTTC TGAGTTCGAG
  GCCAGCCTGG TCTACAGAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37561740	NES08907113	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C	C	C	C	A	A	A	A	C
ss45366899	mCV27575162	ABI	CRAMUS_MOUSE	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27371915					SNP	C	C	A	C	C	C	C	C	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561740	NES08907113	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152609979 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12465	CpG island 12465	1230 bp distal
Rr567460	regulatory region 567460	977 bp distal
Rr567461	regulatory region 567461	1371 bp distal
Rr567462	regulatory region 567462	within coordinates
Rr567463	regulatory region 567463	1547 bp proximal