rs27371916 SNP Detail

Summary

• ID
  rs27371916
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152609910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCTAGGT AGAGAGAGGC
  AGGGTAAAGG CCCCCTGGTG GTGAGGTCTA TTATATGTTT GGGACATAGA GGCAGCCAGT
  AGGAACAGAA GAGACAGAAC AAGAAAGGCG GGAGCAGACA GTCCTCTGAG ACCTACAGGT
  GCTGCTGCTT TTACTGAGGA GGCGTGTTTG TAGGAAAGCA TTCGAGGAGC GATCCGAGGA
  R
  GTGTCAGGAC TAGAGCACAG CGGCTCTCTG GTCCCACAGT CCCCTTTATC ACTCGCTGCC
  TTTGGGCCCT CAGTGTGGGA GGAGAGAGGA TGGGTAAACT GGTCCCACCC TCCAGAACTG
  CCAGCTTATC AAGTAGGACC CACAGGTGGG AGTAATGAGG TAGAAATTCT AAATGGGCCT
  GGCGGTGGTG GCACATGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37561741	NES08907112	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G	G	G	G	G	A	A	G
ss45256809	mCV27575161	ABI	CRAMUS_MOUSE	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27371916					SNP	G	G	A	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561741	NES08907112	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152609910 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12465	CpG island 12465	1161 bp distal
Rr567460	regulatory region 567460	908 bp distal
Rr567461	regulatory region 567461	1302 bp distal
Rr567462	regulatory region 567462	within coordinates
Rr567463	regulatory region 567463	1616 bp proximal